PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10004818m
Common NameCARUB_v10004818mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family AP2
Protein Properties Length: 443aa    MW: 48625.3 Da    PI: 7.2964
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10004818mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.4e-17140189155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Carubv10004818m 140 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 189
                      78*******************......55************************997 PP

2AP243.21e-13232282155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Carubv10004818m 232 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 282
                      89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.9E-9140189IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-16140198IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-17141197IPR001471AP2/ERF domain
PROSITE profilePS5103217.596141197IPR001471AP2/ERF domain
SMARTSM003801.2E-31141203IPR001471AP2/ERF domain
CDDcd000181.32E-11141198No hitNo description
SuperFamilySSF541712.42E-17232292IPR016177DNA-binding domain
CDDcd000184.03E-26232292No hitNo description
PfamPF008472.7E-9232282IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-16233290IPR001471AP2/ERF domain
SMARTSM003801.5E-32233296IPR001471AP2/ERF domain
PROSITE profilePS5103215.672233290IPR001471AP2/ERF domain
PRINTSPR003674.9E-6234245IPR001471AP2/ERF domain
PRINTSPR003674.9E-6272292IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MWDLNDSPHQ TLREEESEEF CYSSPSKRVG SFSTSSSSAL VVEDGSDDDD PNRVRPNNNN  60
NPLVTHQFFP EMDSNGGGGG GGDGGVGSGF PRAHWFGVKF CQSDLATGSS NGKAATVAAA  120
VVEPAQPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY  180
DRAAIKFRGV EADINFNIED YDDDLKQMTN LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH  240
KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYDEELNA  300
ESSGNHPTPQ DHNLDLSLGN SANSKQKSQD MRLKMTQQQQ ELHSNEVLGL SQTGMLNHLP  360
NSNHQFPGSS NIGNGGGFSL FPAAESHRFD GRASTKQVLT NAAASSGFSP HHHNQIYNSS  420
SSTSHQNWLQ SNGFQPPLMR PS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATU125460.0U12546.1 Arabidopsis thaliana Columbia homeotic APETALA2 protein (APETALA2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283745.10.0hypothetical protein CARUB_v10004818mg
SwissprotP479270.0AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLR0GZQ10.0R0GZQ1_9BRAS; Uncharacterized protein
STRINGAT4G36920.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.20.0AP2 family protein